mSystems · 2021 · 33 citations · 87 references
Life SciencesMicrobiologyMolecular BiologyGene ExpressionGenomicsMicrobial GeneticsBacterial Gene RegulationBacterial ToxinsPathogen GenomicsVirulence Gene RegulationBacterial Toxin BiologyGenome-wide CharacterizationRegulation Of Toxin ExpressionRna Sequencing (Rna-seq)Toxin Gene RegulationToxin GenesToxin-antitoxin SystemsTranscriptome Sequencing
Staphylococcus aureus , a commensal and opportunist pathogen, is responsible for a large number of human and animal infections, from benign to severe. Gene expression adaptation during infection requires a complex network of regulators, including transcriptional factors (TF) and sRNAs.
87
The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
HTSeq—a Python framework to work with high-throughput sequencing data
Simon Anders, Paul Theodor Pyl, Wolfgang Huber · Bioinformatics · 2014 · 22.7K citations · Full text
Differential expression analysis for sequence count data
Simon Anders, Wolfgang Huber · Genome biology · 2010 · 16.4K citations · Full text