Proceedings of the National Academy of Sciences · 2021 · 16 citations · 54 references
Life SciencesGeneticsMolecular BiologyGene ExpressionGene RegulationTranscriptional RegulationGene Coexpression NetworksLysosomal BiochemistryLysosome BiologyRegulatory Network InferenceTranscription FactorsGene Regulatory Network ModelsRegulatory Network ModelingResilienceTranscription Factor Activation ModelingTranscription Factor InteractionsTranscriptional ActivationTranscriptional Network InferenceTranscriptional Regulation Networks
Significance Genes often encode for proteins with specialized functions (e.g., lipase). However, the function of the protein, and hence the gene, may be critical for survival in diverse contexts (e.g., fasting and oxidative stress). Hence, how are common survival genes activated in multiple contexts? Based on genetics and mathematical modeling, we describe two modes of transcriptional activation: 1) convergent—a single transcriptional regulator activates the survival gene in multiple contexts—and 2) contextual—the activity/interaction of members of a network of transcriptional regulators is fine-tuned to activate the survival gene through molecular paths that are specific to a context. The results underscore the limitations of across-context molecular inferences and suggest an economic tactic to biological resilience.
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Regulation of Aging and Age-Related Disease by DAF-16 and Heat-Shock Factor
Ao‐Lin Hsu, Coleen T. Murphy, Cynthia Kenyon · Science · 2003 · 1.5K citations
MTORC1 functions as a transcriptional regulator of autophagy by preventing nuclear transport of TFEB
José A. Martina, Yong Chen, Marjan Guček et al. · Autophagy · 2012 · 1.4K citations · Full text