Concepedia

Epigenetic encoding, heritability and plasticity of glioma transcriptional cell states

Ronan Chaligné, Federico Gaiti, Dana Silverbush, Joshua S. Schiffman, Hannah Weisman, Lloyd Kluegel, Simon Gritsch, Sunil Deochand, L. Nicolas Gonzalez Castro, Alyssa Richman,

Nature Genetics · 2021 · 249 citations · 103 references

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103

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text

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BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan, Ira M. Hall · Bioinformatics · 2010 · 30.4K citations · Full text

, , +14

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Bo Li, Colin N. Dewey · BMC Bioinformatics · 2011 · 23.4K citations · Full text

, , +15

An integrated encyclopedia of DNA elements in the human genome

Nature · 2012 · 19.4K citations · Full text

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phytools: an R package for phylogenetic comparative biology (and other things)

Liam J. Revell · Methods in Ecology and Evolution · 2011 · 9.8K citations · Full text

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