World Journal of Gastroenterology · 2021 · 67 citations · 29 references
Life SciencesMicrobiologyPathologyGastroenterologyMedical MicrobiologyMicrobiome ResearchGastrointestinal InflammationGastrointestinal PathologyGut MicrobiomeGut MicrobiotaInflammatory Bowel DiseaseMicrobial Community ProfilingAlpha DiversityAmplicon SequencingAmplicon Sequencing AnalysisFecal Microbiome AnalysisGut Microbiome DiversityInternal Transcribed Spacer (Its) ClusteringInternal Transcribed Spacer SequencingIntestinal Dysbiosis
BACKGROUND: Dysbacteriosis may be a crucial environmental factor for ulcerative colitis (UC). Further study is required on microbiota alterations in the gastrointestinal tract of patients with UC for better clinical management and treatment. AIM: To analyze the relationship between different clinical features and the intestinal microbiota, including bacteria and fungi, in Chinese patients with UC. METHODS: Eligible inpatients were enrolled from January 1, 2018 to June 30, 2019, and stool and mucosa samples were collected. UC was diagnosed by endoscopy, pathology, Mayo Score, and Montreal classification. Gene amplicon sequencing of 16S rRNA gene and fungal internal transcribed spacer gene was used to detect the intestinal microbiota composition. Alpha diversity, principal component analysis, similarity analysis, and Metastats analysis were employed to evaluate differences among groups. RESULTS: showed the opposite trend. More intermicrobial correlations in UC in remission than in active patients were observed. The bacteria-fungi correlations became single and uneven in patients with UC. CONCLUSION: The intestinal bacteria flora of patients with UC differs significantly in terms of various sample types and disease activities. The intermicrobial correlations change in patients with UC compared with non-IBD controls.
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Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment
Xochitl C. Morgan, Timothy L. Tickle, Harry Sokol et al. · Genome biology · 2012 · 2.8K citations · Full text
Fungal microbiota dysbiosis in IBD
Harry Sokol, Valentin Leducq, Hugues Aschard et al. · Gut · 2016 · 1.3K citations · Full text