A Regulator Based “Semi-Targeted” Approach to Activate Silent Biosynthetic Gene Clusters

Abstract

By culturing microorganisms under standard laboratory conditions, most biosynthetic gene clusters (BGCs) are not expressed, and thus, the products are not produced. To explore this biosynthetic potential, we developed a novel "semi-targeted" approach focusing on activating "silent" BGCs by concurrently introducing a group of regulator genes into streptomycetes of the Tübingen strain collection. We constructed integrative plasmids containing two classes of regulatory genes under the control of the constitutive promoter <i>ermE*p</i> (cluster situated regulators (CSR) and <i>Streptomyces</i> antibiotic regulatory proteins (SARPs)). These plasmids were introduced into <i>Streptomyces sp.</i> TÜ17, <i>Streptomyces sp</i>. TÜ10 and <i>Streptomyces sp</i>. TÜ102. Introduction of the CSRs-plasmid into strain <i>S. sp</i>. TÜ17 activated the production of mayamycin A. By using the individual regulator genes, we proved that Aur1P, was responsible for the activation. In strain <i>S. sp</i>. TÜ102, the introduction of the SARP-plasmid triggered the production of a chartreusin-like compound. Insertion of the CSRs-plasmid into strain <i>S. sp</i>. TÜ10 resulted in activating the warkmycin-BGC. In both recombinants, activation of the BGCs was only possible through the simultaneous expression of <i>aur1PR3</i> and <i>griR</i> in <i>S. sp</i>. TÜ102 and <i>aur1P</i> and <i>pntR</i> in of <i>S. sp</i>. TÜ10.