Genomics Proteomics & Bioinformatics · 2021 · 22 citations · 42 references
Life SciencesMolecular BiologyMolecular GeneticsGene ExpressionGenomicsTranscriptomicsAlternative SplicingCardiovascular GenomicsDilated Cardiomyopathy GeneticsHeart FailureRna SplicingRna-protein InteractionsDisease-associated Splicing DefectsIntron RetentionPre-messenger Ribonucleic Acid (Pre-mrna) SplicingSarcomere OrganizationSarcomere StructureSplicing FactorsTranscripts
Alternative mRNA splicing is a fundamental process to increase the versatility of the genome. In humans, cardiac mRNA splicing is involved in the pathophysiology of heart failure. Mutations in the splicing factor RNA binding motif protein 20 (RBM20) cause severe forms of cardiomyopathy. To identify novel cardiomyopathy-associated splicing factors, RNA-seq and tissue-enrichment analyses were performed, which identified up-regulated expression of Sam68-Like mammalian protein 2 (SLM2) in the left ventricle of dilated cardiomyopathy (DCM) patients. In the human heart, SLM2 binds to important transcripts of sarcomere constituents, such as those encoding myosin light chain 2 (MYL2), troponin I3 (TNNI3), troponin T2 (TNNT2), tropomyosin 1/2 (TPM1/2), and titin (TTN). Mechanistically, SLM2 mediates intron retention, prevents exon exclusion, and thereby mediates alternative splicing of the mRNA regions encoding the variable proline-, glutamate-, valine-, and lysine-rich (PEVK) domain and another part of the I-band region of titin. In summary, SLM2 is a novel cardiac splicing regulator with essential functions for maintaining cardiomyocyte integrity by binding to and processing the mRNAs of essential cardiac constituents such as titin.
42
Genetic effects on gene expression across human tissues
Peter Richardson, William J. McKenna, Michael R. Bristow et al. · Circulation · 1996 · 3.5K citations
HnRNP proteins controlled by c-Myc deregulate pyruvate kinase mRNA splicing in cancer
Charles J. David, Mo Chen, Marcela C. Assanah et al. · Nature · 2009 · 1.2K citations · Full text
Molecular diversity of heparan sulfate
Jeffrey D. Esko, Ulf Lindahl · Journal of Clinical Investigation · 2001 · 821 citations
ANG mutations segregate with familial and 'sporadic' amyotrophic lateral sclerosis
Matthew Greenway, Peter M. Andersen, Carsten Russ et al. · Nature Genetics · 2006 · 656 citations
Life Sciences, Genetics, Neurology +13