Mixtures of rare earth elements show antagonistic interactions in Chlamydomonas reinhardtii

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love, Wolfgang Huber, Simon Anders · Genome biology · 2014 · 100.5K citations · Full text

Life Sciences, Bioinformatics, Biostatistics +15

HTSeq—a Python framework to work with high-throughput sequencing data

Simon Anders, Paul Theodor Pyl, Wolfgang Huber · Bioinformatics · 2014 · 22.7K citations · Full text

Life Sciences, Bioinformatics, Biology +11

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim, Geo Pertea, Cole Trapnell et al. · Genome biology · 2013 · 13.7K citations · Full text

Life Sciences, Bioinformatics, Genetics +14

Phytozome: a comparative platform for green plant genomics

David Goodstein, Shengqiang Shu, Russell W. Howson et al. · Nucleic Acids Research · 2011 · 5.8K citations · Full text

Life Sciences, Plant Biology, Plant Sciences +16

<scp>mapman</scp> : a user‐driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes

Oliver Thimm, Oliver E. Bläsing, Yves Gibon et al. · The Plant Journal · 2004 · 3.4K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +11