Conserved pan-cancer microenvironment subtypes predict response to immunotherapy

Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles

Aravind Subramanian, Pablo Tamayo, Vamsi K. Mootha et al. · Proceedings of the National Academy of Sciences · 2005 · 54.5K citations · Full text

Genetics, Genomics, Gene Recognition +23

limma powers differential expression analyses for RNA-sequencing and microarray studies

Matthew E. Ritchie, Belinda Phipson, Di Wu et al. · Nucleic Acids Research · 2015 · 40.9K citations · Full text

Genetics, Molecular Biology, Transcriptomics Technology +19

Fast unfolding of communities in large networks

Vincent D. Blondel, Jean‐Loup Guillaume, Renaud Lambiotte et al. · Journal of Statistical Mechanics Theory and Experiment · 2008 · 20.5K citations · Full text

Engineering, Community Mining, Network Analysis +16

GSVA: gene set variation analysis for microarray and RNA-Seq data

Sonja Hänzelmann, Robert Castelo, Justin Guinney · BMC Bioinformatics · 2013 · 15.6K citations · Full text

Statistical Aspects of the Analysis of Data From Retrospective Studies of Disease

Nathan Mantel, William Haenszel · JNCI Journal of the National Cancer Institute · 1959 · 14.8K citations

Epidemiologic Research, Relative Risk, Epidemiology Of Aging +18