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p53 mediates target gene association with nuclear speckles for amplified RNA expression

Katherine A. Alexander, Allison Coté, Son C. Nguyen, Liguo Zhang, Omid Gholamalamdari, Paula A. Agudelo-Garcia, Enrique Lin-Shiao, K. M. Ahasan Al Tanim, Joan Lim, Nicolas Biddle,

Molecular Cell · 2021 · 116 citations · 53 references

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53

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love, Wolfgang Huber, Simon Anders · Genome biology · 2014 · 100.5K citations · Full text

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Fiji: an open-source platform for biological-image analysis

Johannes Schindelin, Ignacio Arganda‐Carreras, Erwin Frise et al. · Nature Methods · 2012 · 70.9K citations

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Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations

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STAR: ultrafast universal RNA-seq aligner

Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text

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clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

Guangchuang Yu, Li-Gen Wang, Yanyan Han et al. · OMICS A Journal of Integrative Biology · 2012 · 38.3K citations

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