mBio · 2021 · 213 citations · 17 references
Life SciencesBiologyMicrobiologyEnvironmental MicrobiologyMicrobial EcologyMycologyAquatic Microbial EcologyCoastal MicrobiologyDisease EcologyEnvironmental Microbial GenomicsMarine Fungal EcologySalt Marsh EcologyCoastal Fungal EcologyEcological Niche AssessmentEmerging Fungal PathogensEnvironmental IsolationMultidrug-resistant OrganismsMultidrug-resistant PathogensTidal MarshesWetland Microbiology
Candida auris is a recently emerged multidrug-resistant fungal pathogen capable of causing severe infections in hospitalized patients. Despite its recognition as a human pathogen a decade ago, so far the natural ecological niche(s) of C. auris remains enigmatic.
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Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM
Heng Li · arXiv (Cornell University) · 2014 · 5.8K citations · Full text
Global diversity and geography of soil fungi
Leho Tedersoo, Mohammad Bahram, Sergei Põlme et al. · Science · 2014 · 3.6K citations · Full text
Shawn R. Lockhart, Kizee A. Etienne, Snigdha Vallabhaneni et al. · Clinical Infectious Diseases · 2016 · 1.6K citations · Full text