Concepedia

All HPV-negative head and neck cancers are not the same: Analysis of the TCGA dataset reveals that anatomical sites have distinct mutation, transcriptome, hypoxia, and tumor microenvironment profiles

Hugh Andrew Jinwook Kim, Peter YF. Zeng, Mushfiq Hassan Shaikh, Neil Mundi, Farhad Ghasemi, Eric Di Gravio, Halema Khan, Danielle MacNeil, Mohammed Imran Khan, Krupal Patel,

Oral Oncology · 2021 · 27 citations · 43 references

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43

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love, Wolfgang Huber, Simon Anders · Genome biology · 2014 · 100.5K citations · Full text

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Comprehensive genomic characterization of head and neck squamous cell carcinomas

Nature · 2015 · 4.1K citations · Full text

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Estimating the population abundance of tissue-infiltrating immune and stromal cell populations using gene expression

Étienne Becht, Nicolás A. Giraldo, Laetitia Lacroix et al. · Genome biology · 2016 · 4K citations · Full text

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An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics

Jianfang Liu, Tara M. Lichtenberg, Katherine A. Hoadley et al. · Cell · 2018 · 3.9K citations · Full text

, , +14

GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor

Sean Davis, Paul S. Meltzer · Bioinformatics · 2007 · 3.5K citations · Full text

, , +10