mSystems · 2021 · 39 citations · 58 references
Life SciencesImmunologyMicrobiologyMicrobial EcologyMicrobial PathogenesisMicrobiome ResearchGastrointestinal ImmunologyGastrointestinal InflammationInflammatory Bowel DiseaseMucosal InflammationDysbiosis-associated InflammationInflammatory Bowel Disease DysbiosisIntestinal DysbiosisMicrobial Functional Diversity
We developed microbial feature-based classifiers that can distinguish between patients with a normal pouch and pouchitis and identified species and genes that were predictive of pouchitis. We suggest species and functions that could be targeted for intervention to attenuate small intestinal inflammation present in pouchitis and CD.
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Trimmomatic: a flexible trimmer for Illumina sequence data
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Fast gapped-read alignment with Bowtie 2
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Fast and sensitive protein alignment using DIAMOND
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The carbohydrate-active enzymes database (CAZy) in 2013
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