mBio · 2021 · 41 citations · 100 references
Life SciencesInfectious DiseasesMicrobiologyGene ExpressionHost-pathogen InteractionsInnate ImmunityFungal PathogenesisInnate Immune Signaling PathwaysPulmonary InfectionsRespiratory MicrobiomeRespiratory PathologyVirulence Gene RegulationCellular Inflammatory ResponsesHuman Health EffectsPulmonary PathogenesisRespiratory Mucosal DefenseRespiratory Mucosal Pathogenesis
The pathogenic yeast Cryptococcus neoformans presents a worldwide threat to human health, especially in the context of immunocompromise, and current antifungal therapy is hindered by cost, limited availability, and inadequate efficacy. After the infectious particle is inhaled, C. neoformans initiates a complex transcriptional program that integrates cellular responses and enables adaptation to the host lung environment.
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The Sequence Alignment/Map format and SAMtools
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HTSeq—a Python framework to work with high-throughput sequencing data
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Model-based Analysis of ChIP-Seq (MACS)
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