mSphere · 2021 · 21 citations · 82 references
Life SciencesInfectious DiseasesMicrobiologyEpidemiologyMedical MicrobiologyMolecular EpidemiologyAntibiotic ResistanceBacterial EpidemiologyBacterial InfectionsGenomic EpidemiologyMolecular Epidemiology Of ResistancePathogen GenomicsClonal Complex AnalysisGenomic Epidemiology Of ResistanceResistance ClonesResistance Mechanisms In Staphylococci
The rise in prevalence of community-associated methicillin-resistant Staphylococcus aureus (CA-MRSA) is of public health concern. In Argentina, several studies documented a shift in the epidemiology of CA-MRSA since 2009, with clonal complex 30 (CC30) and, in particular, sequence type 30 MRSA SCC mec type IV(ST30-MRSA-IV) replacing other clones both in communities and in hospitals and possibly displaying increased virulence.
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The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text
Prokka: rapid prokaryotic genome annotation
Torsten Seemann · Bioinformatics · 2014 · 19.6K citations