mBio · 2021 · 81 citations · 38 references
Life SciencesInfectious DiseasesMicrobiologyAntimicrobial ResistanceInfectious Disease EpidemiologyMedical MicrobiologyAntibacterial ResistanceAntibiotic ResistanceAntibiotic Resistance EvolutionAntibiotic Resistance GeneticsAntimicrobial Resistance GenomicsResistance GenesAntimicrobial Resistance DynamicsAntimicrobial Resistance EvolutionAntimicrobial Resistance PatternsDrug Resistance Pattern AnalysisGenotypic Resistance SurveillanceResistance Gene EpidemiologySalmonella Resistance
In the early 1900s, with mortality of ∼30%, typhoid and paratyphoid (caused by Salmonella Typhi and Paratyphi A) ravaged parts of the world; with improved water, sanitation, and hygiene in resource-rich countries and the advent of antimicrobials, mortality dwindled to <1%. Today, the burden rests disproportionately on South Asia, where the primary means for combatting the disease is antimicrobials.
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The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text