bioRxiv (Cold Spring Harbor Laboratory) · 2021 · 14 citations · 20 references
Natural SciencesMarine SciencesOceanographyBiogeographyMarine EcologyPhysical OceanographyCross-platform Data HarmonizationData IntegrationMarine BiogeographyMicrobial OceanographyOcean EcologyAccess To Marine Research DataBiogeography Of Marine MicrobesData HarmonizationField ObservationsOcean BiogeochemistryOcean Data VisualizationOceanographic Data CollectionSystematic Data Integration
Abstract Simons Collaborative Marine Atlas Project (Simons CMAP) is an open-source data portal that interconnects large, complex, and diverse public data sets currently dispersed in different formats across different Oceanography discipline-specific databases. Simons CMAP is designed to streamline the retrieval of custom subsets of data, the generation of data visualizations, and the analyses of diverse data, thus expanding the power of these potentially underutilized data sets for cross-disciplinary studies of ocean processes. We describe a unified architecture that allows numerical model outputs, satellite products, and field observations to be readily shared, mined, and integrated regardless of data set size or resolution. A current focus of Simons CMAP is integration of physical, chemical, and biological data sets essential for characterizing the biogeography of key marine microbes across ocean basins and seasonal cycles. Using a practical example, we demonstrate how our unifying data harmonization plans significantly simplifies and allows for systematic data integration across all Simons CMAP data sets.
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