eLife · 2021 · 44 citations · 44 references
Life SciencesDevelopmental BiologyGeneticsCraniofacial DevelopmentGene ExpressionTissue DifferentiationCraniofacial MorphogenesisMuscle DifferentiationSkeletal DevelopmentCranial Neural Crest CellsCraniofacial Muscle DevelopmentLineage Commitment AnalysisOsteogenic DifferentiationProgenitor CellsRunx2 Transcription FactorRunx2 Transcriptional RegulationSoft Palate Morphogenesis
Cranial neural crest (CNC) cells give rise to bone, cartilage, tendons, and ligaments of the vertebrate craniofacial musculoskeletal complex, as well as regulate mesoderm-derived craniofacial muscle development through cell-cell interactions. Using the mouse soft palate as a model, we performed an unbiased single-cell RNA-seq analysis to investigate the heterogeneity and lineage commitment of CNC derivatives during craniofacial muscle development. We show that Runx2, a known osteogenic regulator, is expressed in the CNC-derived perimysial and progenitor populations. Loss of Runx2 in CNC-derivatives results in reduced expression of perimysial markers ( Aldh1a2 and Hic1 ) as well as soft palate muscle defects in Osr2-Cre;Runx2 fl/fl mice. We further reveal that Runx2 maintains perimysial marker expression through suppressing Twist1, and that myogenesis is restored in Osr2-Cre;Runx2 fl/fl ;Twist1 fl/+ mice. Collectively, our findings highlight the roles of Runx2, Twist1, and their interaction in regulating the fate of CNC-derived cells as they guide craniofacial muscle development through cell-cell interactions.
44
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang, Tao Liu, Clifford A. Meyer et al. · Genome biology · 2008 · 19.9K citations · Full text
Comprehensive Integration of Single-Cell Data
Tim Stuart, Andrew Butler, Paul Hoffman et al. · Cell · 2019 · 16.9K citations · Full text
Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM
Heng Li · arXiv (Cornell University) · 2014 · 5.8K citations · Full text