FEBS Open Bio · 2021 · 26 citations · 31 references
MedicineCancer BiologyOncologyCancer ImmunologyMolecular OncologyTumor MicroenvironmentImmune Cell InfiltrationImmuno-oncology BiomarkersKidney CancerRenal Cell CarcinomaTumor Immune MicroenvironmentTumor-infiltrating LymphocytesBiomarker-based Prognostic ModelsCox RegressionImmune Gene Expression SignaturesImmune Infiltration Prognostic SignaturesPrognostic Biomarker DiscoveryProtein-protein Interaction Network AnalysisRenal Cell Carcinoma BiomarkersTumor Microenvironment Biomarkers
Renal cell carcinomas (RCCs) account for about 90% of renal tumors, and their major histological subtype is ccRCC (clear cell RCC). Increasing evidence has indicated that the tumor microenvironment plays a significant role in the occurrence and development of ccRCC. In this study, we used ESTIMATE and CIBERSORT computational methods to calculate the proportion of immune and stromal components and the rate of TICs (tumor-infiltrating immune cells) in 539 ccRCC samples from The Cancer Genome Atlas database. By examining the intersection of the differentially expressed genes obtained by the protein-protein interaction network and Cox regression analysis, we identified only one overlapping gene: IGLL5 (immunoglobulin lambda-like polypeptide 5). We report that IGLL5 expression is correlated with TICs. Furthermore, our immunoinfiltration analyses revealed that three types of TIC are positively correlated with IGLL5 expression. IGLL5 may have potential as a prognostic biomarker of ccRCC.
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