Journal of Berry Research · 2021 · 10 citations · 38 references
AgricultureCrop SciencesPlant SciencesPlant GenomicsPlant Molecular BiologyPlant-microbe InteractionsDisease ResistancePlant Defense ResponsesPlant Disease ResistancePlant Immune ResponsesAllergen-specific Antibody ResponsesAnthracnose ResistanceCross-reactive AntigensFruit AnthracnoseMajor Food AllergensPlant Disease Resistance MechanismsProteome BioinformaticsRna Sequencing (Rna-seq)
BACKGROUND: Bet v 1 family identified as one major plant food allergen class, is highly homologous to pathogenesis-related protein 10 (PR-10), but its biological function involved in disease resistance is still unclear. OBJECTIVE: This study aims to investigate whether Bet v 1 potential allergens participate in the resistance of berry crops against fungal pathogen. METHODS: Allergenicity of Bet v 1 proteins in strawberry (Fragaria) was evaluated by bioinformatics methods. Their expression in response to anthracnose and between susceptible and resistance varieties was analyzed. RESULTS: 19 Bet v 1 homologous proteins were identified and 15 of them were considered as allergen candidates. RNA-seq analysis indicated most of these Fra a 1s expressed in fruits could be largely induced by the invasion of anthracnose pathogen Colletotrichum. The mRNA level of fruit major allergen Fra a 1.05 in the resistant variety Shenyang (SY) was 20∼50 fold higher compared with those in the susceptible cultivar and two diploid wild species. Immunoblotting using Birch (Betula pendula) Bet v 1 allergen-specific IgG antibody confirmed the large-scale accumulation of potential cross-reactive antigens in SY fruit. CONCLUSIONS: Strawberry Bet v 1 potential allergens exhibit their correspondence with anthracnose resistance that might be instructive to future breeding strategies.
38
MUSCLE: multiple sequence alignment with high accuracy and high throughput
R. C. Edgar · Nucleic Acids Research · 2004 · 46.5K citations · Full text
The Pfam Protein Families Database
Alex Bateman · Nucleic Acids Research · 2002 · 14.2K citations · Full text
TM4: A Free, Open-Source System for Microarray Data Management and Analysis
A Saeed, Vasily Sharov, Joseph White et al. · BioTechniques · 2003 · 5K citations · Full text
The Pfam protein families database
Marco Punta, Penny Coggill, Ruth Y. Eberhardt et al. · Nucleic Acids Research · 2011 · 3.8K citations · Full text