Digital Commons - URI (University of Rhode Island) · 2000 · 147 citations · 36 references
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Natural SciencesChemistryPhysicsPhysical ChemistryTheoretical ChemistryThermodynamicsCondensed Matter SimulationsMolecular DynamicsMolecular SimulationMolecular ThermodynamicsPhase EquilibriaStatistical MechanicsErgodic ProcessesErgodic PropertiesMicrocanonical EnsembleMolecular Dynamics EnsemblesMonte Carlo EnsemblesMonte Carlo SamplingParallel TemperingStatistical Mechanics Of Molecular Systems
We study the 38-atom Lennard-Jones cluster with parallel tempering Monte Carlo methods in the microcanonical and molecular dynamics ensembles. A new Monte Carlo algorithm is presented that samples rigorously the molecular dynamics ensemble for a system at constant total energy, linear and angular momenta. By combining the parallel tempering technique with molecular dynamics methods, we develop a hybrid method to overcome quasiergodicity and to extract both equilibrium and dynamical properties from Monte Carlo and molecular dynamics simulations. Several thermodynamic, structural, and dynamical properties are investigated for LJ38 , including the caloric curve, the diffusion constant and the largest Lyapunov exponent. The importance of insuring ergodicity in molecular dynamics simulations is illustrated by comparing the results of ergodic simulations with earlier molecular dynamics simulations.
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Equation of State Calculations by Fast Computing Machines
N. Metropolis, Arianna W. Rosenbluth, M. N. Rosenbluth et al. · The Journal of Chemical Physics · 1953 · 37.1K citations
Replica-exchange molecular dynamics method for protein folding
Yuji Sugita, Yuko Okamoto · Chemical Physics Letters · 1999 · 4.6K citations
Simulated Tempering: A New Monte Carlo Scheme
Enzo Marinari, Giorgio Parisi · Europhysics Letters (EPL) · 1992 · 1.9K citations · Full text