The Analyst · 2020 · 80 citations · 29 references
Life SciencesBiochemistryProtein BiochemistryProteomicsProtein CharacterizationLabel-free Detection
Establishing standardized methods for a consistent analysis of spectral data remains a largely underexplored aspect in surface-enhanced Raman spectroscopy (SERS), particularly applied to biological and biomedical research. Here we propose an effective machine learning classification of protein species with closely resembled spectral profiles by a mixed data processing based on principal component analysis (PCA) applied to multipeak fitting on SERS spectra. This strategy simultaneously assures a successful discrimination of proteins and a thorough characterization of the chemostructural differences among them, ultimately opening up new routes for SERS evolution toward sensing applications and diagnostics of interest in life sciences.
29
Jake Lever, Martin Krzywinski, Naomi Altman · Nature Methods · 2017 · 1.4K citations
The art of using t-SNE for single-cell transcriptomics
Dmitry Kobak, Philipp Berens · Nature Communications · 2019 · 1.1K citations · Full text