Nature Communications · 2020 · 248 citations · 77 references
Life SciencesBiotechnologyMicrobiologyEnvironmental BiotechnologyMetagenomicsMicrobial EcologyBiodegradable PolymersBiodegradationBioremediationEnvironmental Microbial BiotechnologyMarine Microbial BiotechnologyMarine Microbial MetabolismAliphatic Polyester BiodegradationBiomaterial Degradation ProductsDegradationMarine BiodegradationPlastic BiodegradationPlastics DegradationPolymer BiodegradationSynthetic Polymers
Abstract The degradation of synthetic polymers by marine microorganisms is not as well understood as the degradation of plastics in soil and compost. Here, we use metagenomics, metatranscriptomics and metaproteomics to study the biodegradation of an aromatic-aliphatic copolyester blend by a marine microbial enrichment culture. The culture can use the plastic film as the sole carbon source, reaching maximum conversion to CO 2 and biomass in around 15 days. The consortium degrades the polymer synergistically, with different degradation steps being performed by different community members. We identify six putative PETase-like enzymes and four putative MHETase-like enzymes, with the potential to degrade aliphatic-aromatic polymers and their degradation products, respectively. Our results show that, although there are multiple genes and organisms with the potential to perform each degradation step, only a few are active during biodegradation.
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The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
Guangchuang Yu, Li-Gen Wang, Yanyan Han et al. · OMICS A Journal of Integrative Biology · 2012 · 38.3K citations