Antimicrobial Agents and Chemotherapy · 2020 · 12 citations · 28 references
Life SciencesMicrobiologyVeterinary MicrobiologyBacteriologyHost-pathogen InteractionsMicrobial EcologyAntibiotic ResistanceBacterial EpidemiologyBacterial ZoonosesCarbapenem ResistancePathogen DetectionResistance In Gram-negative BacteriaBacterial Pathogenesis In WildlifeCarbapenem Resistance MechanismsCarbapenem Resistance PlasmidsCarbapenemase EnzymesEmerging Zoonotic BacteriaKlebsiella Pneumoniae CarbapenemaseWildlife Pathogen DiversityZoonotic Bacterial Infections
Wild corvids were examined for the presence of carbapenemase-producing Gram-negative bacteria in the United States. A total of 13 isolates were detected among 590 fecal samples of American crow; 11 Providencia rettgeri isolates harboring bla IMP-27 on the chromosome as a class 2 integron gene cassette within the Tn 7 transposon, 1 Klebsiella pneumoniae ST258 isolate carrying bla KPC-2 on a pKpQIL-like plasmid as a part of Tn 4401a , and 1 Enterobacter bugandensis isolate with bla IMI-1 located within EcloIMEX-2.
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Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
Prokka: rapid prokaryotic genome annotation
Torsten Seemann · Bioinformatics · 2014 · 19.6K citations