Genomics Proteomics & Bioinformatics · 2020 · 28 citations · 27 references
Life SciencesPlant BiologyPlant SciencesComparative GenomicsPlant EvolutionPlant GenomicsComparative Plant GenomicsGenome Evolution In PlantsPlant PhylogenyPolyploid GenomicsPolyploidy In Plant EvolutionComparative Genomics Of PolyploidsLycophyte EvolutionLycophyte PhylogenyOrigin Of Vascular PlantsPlant Evolutionary HistoryPolyploidizationPolyploidy EvolutionVascular Plant Phylogeny
Lycophytes and seed plants constitute the typical vascular plants. Lycophytes have been thought to have no paleo-polyploidization although the event is known to be critical for the fast expansion of seed plants. Here, genomic analyses including the homologous gene dot plot analysis detected multiple paleo-polyploidization events, with one occurring approximately 13-15 million years ago (MYA) and another about 125-142 MYA, during the evolution of the genome of Selaginella moellendorffii, a model lycophyte. In addition, comparative analysis of reconstructed ancestral genomes of lycophytes and angiosperms suggested that lycophytes were affected by more paleo-polyploidization events than seed plants. Results from the present genomic analyses indicate that paleo-polyploidization has contributed to the successful establishment of both lineages-lycophytes and seed plants-of vascular plants.
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PAML 4: Phylogenetic Analysis by Maximum Likelihood
Molecular Biology and Evolution · 2007 · 14.8K citations · Full text
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
Yupeng Wang, Haibao Tang, Jeremy D. DeBarry et al. · Nucleic Acids Research · 2012 · 8.4K citations · Full text
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
Virginie Vico, Claude Scarpelli, François Artiguenave et al. · Nature · 2007 · 3.9K citations · Full text