Concepedia

Genetic elucidation of interconnected antibiotic pathways mediating maize innate immunity

Yezhang Ding, Philipp Weckwerth, Elly Poretsky, Katherine M. Murphy, James W. Sims, Evan Saldivar, Shawn A. Christensen, Si Nian Char, Bing Yang, Anh-dao Tong,

Nature Plants · 2020 · 90 citations · 56 references

DOI

Concepts

References

56

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text

, , +13

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

Yang Liao, Gordon K. Smyth, Wei Shi · Bioinformatics · 2013 · 29.1K citations · Full text

, , +14

HISAT: a fast spliced aligner with low memory requirements

Daehwan Kim, Ben Langmead, Steven L. Salzberg · Nature Methods · 2015 · 26.1K citations · Full text

, , +3

HTSeq—a Python framework to work with high-throughput sequencing data

Simon Anders, Paul Theodor Pyl, Wolfgang Huber · Bioinformatics · 2014 · 22.7K citations · Full text

, , +11

Differential expression analysis for sequence count data

Simon Anders, Wolfgang Huber · Genome biology · 2010 · 16.4K citations · Full text

, , +15