Proceedings of the National Academy of Sciences · 2020 · 141 citations · 56 references
AgricultureGeneticsMicrobiologyGenomicsMicrobial EcologyPlant-microbe InteractionsRhizosphere BiologyRhizosphere ColonizationRhizosphere EcologyRhizosphere InteractionsRhizosphere MicrobiologySoil Microbial GeneticsHost-plant CoevolutionLegume SymbiosisLegume-rhizobium SymbiosisRhizobial SymbiosisRhizobium SymbiosisRhizobium-legume SymbiosisRhizosphere FitnessSymbiotic Microbial Genomics
Significance Rhizobia are soil-dwelling bacteria that form symbioses with legumes and provide biologically useable nitrogen as ammonium for the host plant. High-throughput DNA sequencing has led to a rapid expansion in publication of complete genomes for numerous rhizobia, but analysis of gene function increasingly lags gene discovery. Mariner-based transposon insertion sequencing has allowed us to characterize the fitness contribution of bacterial genes and determine those functionally important in a Rhizobium– legume symbiosis at multiple stages of development.
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Fast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations
Root exudates mediated interactions belowground
Feth el Zahar Haichar, Catherine Santaella, Thierry Heulin et al. · Soil Biology and Biochemistry · 2014 · 1K citations
Amino-acid cycling drives nitrogen fixation in the legume–Rhizobium symbiosis
E. M. Lodwig, A. H. F. Hosie, Alexandre Bourdès et al. · Nature · 2003 · 515 citations