Proceedings of the National Academy of Sciences · 2020 · 47 citations · 47 references
Life SciencesCell BiologyMolecular BiologyGene ExpressionMolecular Cell BiologyTranscriptomicsCancer GenomicsCancer TranscriptomicsCell-type-specific TranscriptomicsOncogenic Signaling PathwaysPancreatic PathologyTranscriptome AnnotationIntestinal Gene Expression ResponsesMaintenance Of Transcriptional StatesRna SequencingRna Sequencing (Rna-seq)Tumor Suppressor P53
Global p53 activation caused a metaplastic phenotype in the pancreas that was missing in mice with acinar-specific p53 activation, suggesting non-cell-autonomous effects. The p53 cellular response at single-cell resolution in the intestine altered transcriptional cell state, leading to a proximal enterocyte population enriched for genes within oxidative phosphorylation pathways. In addition, a population of active CD8+ T cells was recruited. Combined, this study provides a comprehensive profile of the p53 transcriptional response in vivo, revealing both tissue-specific transcriptomes and a unique signature, which were integrated to induce both cell-autonomous and non-cell-autonomous responses and transcriptional plasticity.
47
The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text
Comprehensive Integration of Single-Cell Data
Tim Stuart, Andrew Butler, Paul Hoffman et al. · Cell · 2019 · 16.9K citations · Full text