Concepedia

Memory Sequencing Reveals Heritable Single-Cell Gene Expression Programs Associated with Distinct Cellular Behaviors

Sydney M. Shaffer, Benjamin Emert, Raúl A. Reyes Hueros, Christopher Coté, Guillaume Harmange, Dylan L. Schaff, Ann E. Sizemore, Rohit Gupte, Eduardo A. Torre, Abhyudai Singh,

Cell · 2020 · 200 citations · 51 references

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51

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love, Wolfgang Huber, Simon Anders · Genome biology · 2014 · 94.7K citations · Full text

The Sequence Alignment/Map format and SAMtools

Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 64.7K citations · Full text

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 53.2K citations · Full text

HTSeq—a Python framework to work with high-throughput sequencing data

Simon Anders, Paul Theodor Pyl, Wolfgang Huber · Bioinformatics · 2014 · 21.9K citations · Full text

Gephi: An Open Source Software for Exploring and Manipulating Networks

Mathieu Bastian, Sébastien Heymann, Mathieu Jacomy · Proceedings of the International AAAI Conference on Web and Social Media · 2009 · 11K citations · Full text

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