IEEE Transactions on Neural Networks and Learning Systems · 2020 · 154 citations · 43 references
Natural SciencesBioengineeringMathematicsBiological Systems ModelingCost-minimization AnalysisOptimizationBoolean Network ModelsControl SystemsControl TheoryOptimal ControlPolicy IterationStochastic ControlAra Operon OrganizationBoolean Gene NetworksControl Of Boolean NetworksOptimal Control FormulationOptimality ConditionsOptimality EquationsProbabilistic Boolean NetworksState Feedback Control
This article studies the optimal control of probabilistic Boolean control networks (PBCNs) with the infinite horizon average cost criterion. By resorting to the semitensor product (STP) of matrices, a nested optimality equation for the optimal control problem of PBCNs is proposed. The Laurent series expression technique and the Jordan decomposition method derive a novel policy iteration-type algorithm, where finite iteration steps can provide the optimal state feedback law, which is presented. Finally, the intervention problem of the probabilistic Ara operon in E. coil, as a biological application, is solved to demonstrate the effectiveness and feasibility of the proposed theoretical approach and algorithms.
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Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networks
Ilya Shmulevich, Edward R. Dougherty, Seungchan Kim et al. · Bioinformatics · 2002 · 1.6K citations · Full text