Disentangling the evolutionary history of peri-Mediterranean cyprinids using host-specific gill monogeneans

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis · Bioinformatics · 2014 · 34.3K citations · Full text

Life Sciences, Bioinformatics, Biology +12

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

Fredrik Ronquist, Maxim Teslenko, Paul van der Mark et al. · Systematic Biology · 2012 · 28K citations · Full text

Life Sciences, Bioinformatics, Biology +17

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

Kazutaka Katoh · Nucleic Acids Research · 2002 · 17.8K citations · Full text

Life Sciences, Bioinformatics, Biology +13

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

Alexandros Stamatakis · Bioinformatics · 2006 · 15.9K citations · Full text

Life Sciences, Bioinformatics, High-performance Computing +17

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

Andrew Rambaut, Alexei J. Drummond, Dong Xie et al. · Systematic Biology · 2018 · 11.3K citations · Full text

Life Sciences, Bioinformatics, Evolutionary Biology +17