Random Forests

Leo Breiman

Machine Learning

Basic local alignment search tool

Stephen F. Altschul, Warren Gish, Webb Miller, +2

Journal of Molecular Biology

BioinformaticsEngineeringInformation RetrievalString-searching AlgorithmString Processing +8

KEGG: Kyoto Encyclopedia of Genes and Genomes

Minoru Kanehisa

Nucleic Acids Research

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

Sudhir Kumar, Glen Stecher, Michael Li, +2

Molecular Biology and Evolution

Comparative GenomicsGeneticsGenomicsPhylogenetic AnalysisPhylogenetics +16

KEGG: Kyoto Encyclopedia of Genes and Genomes

Hiroyuki Ogata, Susumu Goto, Kazushige Sato, +3

Nucleic Acids Research

GeneticsMolecular BiologyGenomicsBioinformatics DatabaseKyoto Encyclopedia +16

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

Christian Quast, Elmar Pruesse, Pelin Yilmaz, +5

Nucleic Acids Research

Ribosomal RnaGeneticsGenomicsSequence AlignmentArchaea +18

UPARSE: highly accurate OTU sequences from microbial amplicon reads

R. C. Edgar

Nature Methods

Long-read SequencingAccurate Otu SequencesSequence AnalysisMicrobiologyGenomics +3

UCHIME improves sensitivity and speed of chimera detection

R. C. Edgar, Brian J. Haas, José C. Clemente, +2

Bioinformatics

An obesity-associated gut microbiome with increased capacity for energy harvest

Peter J. Turnbaugh, Ruth E. Ley, Michael A. Mahowald, +3

Nature

ObesityNutritionEnergy HarvestDysbiosisPhysiology +10

A human gut microbial gene catalogue established by metagenomic sequencing

Junjie Qin, Ruiqiang Li, Jeroen Raes, +49

Nature