Antimicrobial Agents and Chemotherapy · 2020 · 115 citations · 25 references
Life SciencesBiotechnologyMicrobiologyGenetic EngineeringGenome EditingMedical MicrobiologyCarbapenem ResistanceCrispr-based EngineeringCrispr-cas SystemsPlasmid BiologyPlasmid GeneticsPlasmid-mediated ResistanceCarbapenem Resistance PlasmidsCrispr-cas Genome EditingCrispr-cas9 Genome EditingCrispr-cas9-mediated RepairEscherichia ColiKlebsiella Pneumoniae CarbapenemaseKlebsiella Pneumoniae ResistancePlasmid Curing
Combating plasmid-mediated carbapenem resistance is essential to control and prevent the dissemination of carbapenem-resistant Enterobacteriaceae (CRE). Here, we conducted a proof-of-concept study to demonstrate that CRISPR-Cas9-mediated resistance gene and plasmid curing can effectively resensitize CRE to carbapenems. A novel CRISPR-Cas9-mediated plasmid-curing system (pCasCure) was developed and electrotransferred into various clinical CRE isolates. The results showed that pCasCure can effectively cure bla KPC , bla NDM , and bla OXA-48 in various Enterobacteriaceae species of Klebsiella pneumoniae , Escherichia coli , Enterobacter hormaechei , Enterobacter xiangfangensis , and Serratia marcescens clinical isolates, with a >94% curing efficiency.
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Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text