Development of a plasma pseudotargeted metabolomics method based on ultra-high-performance liquid chromatography–mass spectrometry

XCMS:  Processing Mass Spectrometry Data for Metabolite Profiling Using Nonlinear Peak Alignment, Matching, and Identification

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Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

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Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry

Warwick B. Dunn, David Broadhurst, Paul Begley et al. · Nature Protocols · 2011 · 3.2K citations

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Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis

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Metabolic profiling, metabolomic and metabonomic procedures for NMR spectroscopy of urine, plasma, serum and tissue extracts

Olaf Beckonert, Hector C. Keun, Timothy M. D. Ebbels et al. · Nature Protocols · 2007 · 2.1K citations

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