Journal of the American Medical Informatics Association · 2020 · 25 citations · 18 references
ComputingBiomedical InformaticsHealth InformaticsAllergyClinical Decision SupportNatural Language ProcessingAdverse Drug Event DetectionAdverse Drug Reaction DetectionAdverse Drug Reaction ReportingAllergy DocumentationClinical Natural Language ProcessingDrug AllergyAllergy Information ExtractionAllergy List ReconciliationAllergy ReconciliationAllergy Record ValidationAllergy RecordsAssociation Rule MiningFree-text Allergy DocumentationStructured Allergy Data Entry
OBJECTIVE: Incomplete and static reaction picklists in the allergy module led to free-text and missing entries that inhibit the clinical decision support intended to prevent adverse drug reactions. We developed a novel, data-driven, "dynamic" reaction picklist to improve allergy documentation in the electronic health record (EHR). MATERIALS AND METHODS: We split 3 decades of allergy entries in the EHR of a large Massachusetts healthcare system into development and validation datasets. We consolidated duplicate allergens and those with the same ingredients or allergen groups. We created a reaction value set via expert review of a previously developed value set and then applied natural language processing to reconcile reactions from structured and free-text entries. Three association rule-mining measures were used to develop a comprehensive reaction picklist dynamically ranked by allergen. The dynamic picklist was assessed using recall at top k suggested reactions, comparing performance to the static picklist. RESULTS: The modified reaction value set contained 490 reaction concepts. Among 4 234 327 allergy entries collected, 7463 unique consolidated allergens and 469 unique reactions were identified. Of the 3 dynamic reaction picklists developed, the 1 with the optimal ranking achieved recalls of 0.632, 0.763, and 0.822 at the top 5, 10, and 15, respectively, significantly outperforming the static reaction picklist ranked by reaction frequency. CONCLUSION: The dynamic reaction picklist developed using EHR data and a statistical measure was superior to the static picklist and suggested proper reactions for allergy documentation. Further studies might evaluate the usability and impact on allergy documentation in the EHR.
18
Statistical Comparisons of Classifiers over Multiple Data Sets
Janez Demšar · 2006 · 11.2K citations
Adverse Drug Events in Ambulatory Care
Tejal K. Gandhi, Saul N. Weingart, Joshua Borus et al. · New England Journal of Medicine · 2003 · 1.4K citations
SNOMED-CT: The advanced terminology and coding system for eHealth.
K. Donnelly · PubMed · 2006 · 550 citations
Overrides of Medication Alerts in Ambulatory Care
Thomas Isaac, Joel S. Weissman, Roger B. Davis et al. · Archives of Internal Medicine · 2009 · 311 citations
Drug allergies documented in electronic health records of a large healthcare system
Lei Zhou, Neil Dhopeshwarkar, Kimberly G. Blumenthal et al. · Allergy · 2016 · 308 citations · Full text