medRxiv · 2020 · 21 citations · 6 references
Public HealthImmunologyInfectious DiseasesEpidemiologic MethodsEpidemiologyMeta-analysisBayesian Meta-analysisSeroprevalence StudiesGeneralized Linear Mixed ModelsGeneralized Linear Mixed-effects ModelsHierarchical Bayesian ModelSeroprevalence Meta-analysisSpatial Seroprevalence PatternsStatistical PowerStatistical Power AnalysisStatistical Power Estimation
Abstract In recent weeks, several seroprevalence studies have appeared which attempt to determine the prevalence of antibodies against SARS-CoV-2 in the population of certain European and American locations. Many of these studies find an antibody prevalence comparable to the false positive rate of their respective serology tests and the relatively low statistical power associated with each study has invited criticism. To determine the strength of the signal, we perform a meta-analysis on the publicly available seroprevalence data based on Bayesian hierarchical modelling with Markov Chain Monte Carlo and Generalized Linear Mixed Modelling with prediction sampling. We examine studies with results from Santa Clara County (CA), Los Angeles County (CA), San Miguel County (CO), Chelsea (MA), the Comté de Genève (Switzerland), and Gangelt (Germany). Our results are in broad agreement with the conclusions of the studies; we find that there is evidence for non-trivial levels of antibody prevalence across all study locations. However, we also find that a significant probability mass exists for antibody prevalence at levels lower than the reported figures. The results of our meta-analysis on the recent seroprevalence studies point to an important and strongly suggestive signal.
6
Fitting Linear Mixed-Effects Models Using <b>lme4</b>
Douglas M. Bates, Martin Mächler, Benjamin M. Bolker et al. · Journal of Statistical Software · 2015 · 85.6K citations · Full text
<i>Stan</i> : A Probabilistic Programming Language
Bob Carpenter, Andrew Gelman, Matthew D. Hoffman et al. · Journal of Statistical Software · 2017 · 7.4K citations · Full text
COVID-19 Antibody Seroprevalence in Santa Clara County, California
Eran Bendavid, Bianca Mulaney, Neeraj Sood et al. · medRxiv · 2020 · 561 citations · Full text
Evaluation of nine commercial SARS-CoV-2 immunoassays
Ria Lassaunière, Anders Frische, Zitta Barrella Harboe et al. · medRxiv · 2020 · 373 citations · Full text
SARS-CoV-2 specific antibody responses in COVID-19 patients
Nisreen M.A. Okba, Marcel A. Müller, Wentao Li et al. · medRxiv · 2020 · 224 citations · Full text