mSystems · 2020 · 115 citations · 48 references
Life SciencesGeneticsMicrobiologyAntimicrobial ResistanceGenomicsMicrobial GeneticsAntibiotic ResistanceAntibiotic Resistance GeneticsPlasmid GeneticsPlasmid GenomicsPlasmid-mediated ResistanceResistance GenesAntibiotic Resistance PlasmidsEscherichia ColiPlasmid ClassificationPlasmid-borne Antibiotic ResistancePlasmid-mediated Resistance TransferPlasmidome AnalysisResistance Plasmid TransferWhole-genome Sequencing Analysis
Tigecycline is an expanded-spectrum tetracycline used as a last-resort antimicrobial for treating infections caused by superbugs such as carbapenemase-producing or colistin-resistant pathogens. Emergence of the plasmid-mediated mobile tigecycline resistance gene tet (X4) created a great public health concern. However, the diversity of tet (X4)-bearing plasmids and bacteria remains largely uninvestigated. To cover this knowledge gap, we comprehensively identified and characterized the tet (X)-bearing plasmidome in different sources using advanced sequencing technologies for the first time. The huge diversity of tet (X4)-bearing mobile elements demonstrates the high level of transmissibility of the tet (X4) gene among bacteria. It is crucial to enhance stringent surveillance of tet (X) genes in animal and human pathogens globally.
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Torsten Seemann · Bioinformatics · 2014 · 19.6K citations
Assembly of long, error-prone reads using repeat graphs
Mikhail Kolmogorov, Jeffrey Yuan, Yu Lin et al. · Nature Biotechnology · 2019 · 6.3K citations
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Andrew J. Page, Carla Cummins, Martin Hunt et al. · Bioinformatics · 2015 · 5.9K citations · Full text