mBio · 2020 · 27 citations · 60 references
Life SciencesEvolutionary BiologyMicrobiologyHost-pathogen InteractionsMicrobial PathogenesisMicrobial PhysiologyBacterial PathogenesisBacterial Secretion SystemsBacterial Virulence FactorsHost-pathogen CoevolutionMicrobial Virulence FactorsPathogen Virulence FactorsComparative Experimental EvolutionEvolution Of Virulence FactorsProtease-mediated Stress ResponseProteolytic PathwaysStress Response FactorsStress Response In PathogenesisVirulence Evolution In Opportunistic PathogensVirulence Secretion Mechanisms
Bacterial stress responses are generally considered protective measures taken by individual cells. Enabled by an experimental evolution approach, we describe a contrasting property, collective nutrient acquisition, in the RpoS-dependent stress response of the opportunistic human pathogen P. aeruginosa . Specifically, we identify the secreted P. aeruginosa aminopeptidase (PaAP) as an essential RpoS-controlled function in extracellular proteolysis. As a secreted “public good,” PaAP permits cheating by rpoS mutants that save the metabolic costs of expressing RpoS-controlled genes dispensable under the given growth conditions. Proteolytic enzymes are important virulence factors in P. aeruginosa pathogenesis and constitute a potential target for antimicrobial therapy. More broadly, our work contributes to recent findings in higher organisms that stress affects not only individual fitness and competitiveness but also cooperative behavior.
60
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
Fast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations