Concepedia

Assessment of a multiplex PCR and Nanopore-based method for dengue virus sequencing in Indonesia

Samuel Stubbs, Barbara Blacklaws, Benediktus Yohan, Frilasita A. Yudhaputri, Rahma Hayati, Brian Schwem, Edsel Maurice T. Salvaña, Raul V. Destura, James Lester, Khin Saw Aye Myint,

Virology Journal · 2020 · 67 citations · 23 references

DOIFull text

Open access

References

23

The Sequence Alignment/Map format and SAMtools

Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 64.7K citations · Full text

Fast and accurate short read alignment with Burrows–Wheeler transform

Heng Li, Richard Durbin · Bioinformatics · 2009 · 60.7K citations · Full text

MUSCLE: multiple sequence alignment with high accuracy and high throughput

R. C. Edgar · Nucleic Acids Research · 2004 · 45.3K citations · Full text

, , +17

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

Lam-Tung Nguyen, Heiko A. Schmidt, Arndt von Haeseler et al. · Molecular Biology and Evolution · 2014 · 25.9K citations · Full text

ModelFinder: fast model selection for accurate phylogenetic estimates

Subha Kalyaanamoorthy, Bùi Quang Minh, Thomas K. F. Wong et al. · Nature Methods · 2017 · 17.4K citations

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