mSphere · 2020 · 32 citations · 31 references
Life SciencesGeneticsMicrobiologyGenomicsMicrobial GeneticsMicrobial GenomicsMicrobial Virulence FactorsPathogen GenomicsPathogen Sequence AnalysisPathogen Virulence FactorsVirulence GenomicsBacterial Virulence GenesFunctional Genomics Of PathogensGenomic Characterization Of PathogensVirulence Factor AnnotationVirulence Gene AnalysisVirulence Gene ClustersVirulence Gene IdentificationWhole-genome Sequencing-based Typing
While the GAS M protein has been the leading vaccine target for decades, the bacteria encode many other virulence factors of interest for vaccine development. In this work, we show that emm -like genes are encoded in a remarkable majority of GAS genomes and expressed at a level similar to that for the emm gene. In collaboration with the U.S. Centers for Disease Control, we developed molecular definitions of the different emm and emm -like gene families. This clarification should abrogate mistyping of strains, especially in the area of whole-genome typing. We have also updated the emm -typing collection by removing emm -like gene sequences and provided in-depth analysis of Mrp and Enn protein sequence structure and diversity.
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MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
Sudhir Kumar, Glen Stecher, Michael Li et al. · Molecular Biology and Evolution · 2018 · 38.8K citations · Full text
RDP4: Detection and analysis of recombination patterns in virus genomes
Darren P. Martin, Ben Murrell, Michael Golden et al. · Virus Evolution · 2015 · 3.4K citations · Full text