RSC Advances · 2020 · 19 citations · 70 references
Natural SciencesBiochemistryBiophysicsBiomolecular ModelingComputational ChemistryStructural BiologyBinding ThermodynamicsBiomolecular ThermodynamicsFree EnergyLigand BindingMolecular DynamicsSolvation ModelingBinding Free EnergyLigand-binding EnergeticsMolecular Dynamics Free Energy CalculationsProtein-ligand Binding Free EnergyProtein-ligand Binding Free Energy CalculationsProtein-ligand Binding ThermodynamicsResidue InteractionsResidue-residue Interactions
, for the dimerization of the insulin. We also perform MM-PBSA calculations for the wild-type dimer and some mutants and study the roles of the key residues by the change of the binding energy of the insulin dimer.
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VMD: Visual molecular dynamics
William Humphrey, Andrew Dalke, Klaus Schulten · Journal of Molecular Graphics · 1996 · 66.6K citations