Journal of Clinical Microbiology · 2020 · 62 citations · 41 references
Life SciencesMicrobiologyPathologyMedical MicrobiologyMicrobial PathogenesisMycologyFungal ClassificationFungal IdentificationFungal InfectionsFungal PathogenesisFungal PathologyMicrobial IdentificationAntifungal Susceptibility TestingBlastomycosis LesionsDermatomycosis In HumansFungal DermatosesFungal Genome SequencingFungal Pathogen DetectionWhole-genome PhylogenyWhole-genome Sequencing Analysis
We reevaluated 20 cases of blastomycosis diagnosed in South Africa between 1967 and 2014, with Blastomyces dermatitidis considered to be the etiological agent, in light of newly described species and the use of more advanced technologies. In addition to histopathological and/or culture-based methods, all 20 isolates were phenotypically and genotypically characterized, including multilocus typing of five genes and whole-genome sequencing.
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MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
Koichiro Tamura, Glen Stecher, Daniel S. Peterson et al. · Molecular Biology and Evolution · 2013 · 47.9K citations · Full text
The variant call format and VCFtools
Petr Danecek, Adam Auton, Gonçalo R. Abecasis et al. · Bioinformatics · 2011 · 17.8K citations · Full text