INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · 2019 · 26 citations · 22 references
Life SciencesMarine SciencesMicrobiologyAquatic MicrobiologyMarine MicrobiologyMicrobial EcologyAquatic Microbial EcologyBacterial ToxinsMarine BiotoxinsMarine PhylogeneticsMicrobial Phylogeny16S Rrna Gene PhylogenyAlexandrium ToxinsDinoflagellate ToxinsFatty AcidsPhylogenetic Character AnalysisSequence SimilarityShellfish BiotoxinsSystematics Of Marine Microorganisms
A Gram-negative, aerobic, non-motile, non-spore-forming and rod-shaped bacterium, named strain LZ-16-2 T , was isolated from the phycosphere microbiota of the paralytic shellfish poisoning toxin-producing marine dinoflagellate Alexandrium catenella LZT09. Strain LZ-16-2 T grew optimally at 28 °C at pH 6.5 and with 3 % (w/v) NaCl. Phylogenetic analysis based on 16S rRNA gene sequence revealed that strain LZ-16-2 T fell within the genus Haliea and was most closely related to Haliea salexigens DSM 19537 T , with which the new isolate exhibited 98.5 % 16S rRNA gene sequence similarity. The major respiratory quinone was Q-8. The predominant cellular fatty acids were C 17 : 1 ω8 c , summed feature 3 (C 16 : 1 ω7 c and/or C 16 : 1 ω6 c ), summed feature 8 (C 18 : 1 ω7 c and/or C 18 : 1 ω6 c ), C 17 : 1 ω6 c , C 11 : 0 3-OH and C 17 : 0 . The major polar lipids were phosphatidylethanolamine, phosphatidylglycerol and diphosphatidylglycerol. The average nucleotide identity and in silico DNA–DNA genome hybridization relatedness values between strain LZ-16-2 T and its closest relative, H. salexigens DSM 19537 T , were 92.8 and 55.1 %, respectively. The DNA G+C content was 61.3 mol%. Differential phenotypic properties and phylogenetic distinctiveness distinguished strain LZ-16-2 T from all other members of the genus Haliea . On the basis of the polyphasic characterization, strain LZ-16-2 T represents a novel species of the genus Haliea , for which the name Haliea alexandrii sp. nov. is proposed. The type strain is LZ-16-2 T (=KCTC 62344 T =CCTCC AB2017229 T ).
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SOAPdenovo2: an empirically improved memory-efficient short-read <i>de novo</i> assembler
Ruibang Luo, Binghang Liu, Yinlong Xie et al. · GigaScience · 2012 · 5.6K citations · Full text