American Journal of Botany · 2019 · 12 citations · 72 references
Life SciencesBiologyEcologyPhylogeneticsPlant MorphologySpeciationEvolutionary RelationshipsMaximum Likelihood PhylogeneticsMolecular PhylogenyPhylogenetic AnalysisPhylogenetic Tree ReconstructionPlant PhylogenyChloroplast Phylogenetic ReconstructionDna Sequence Data AnalysisIntraspecific DiversityIntraspecific Genetic DiversityIntraspecific HybridizationMorphological PhylogenyNuclear Gene PhylogeneticsNuclear Gene Phylogeny
PREMISE: The submersed aquatic plant Hydrilla verticillata ("hydrilla") is important ecologically and economically due to its aggressive growth in both indigenous and nonindigenous regions. Substantial morphological variation has been documented in hydrilla, including the existence of monoecious and dioecious "biotypes." Whereas plastid sequence data have been used previously to explore intraspecific diversity, nuclear data have yet to be analyzed in a phylogenetic context. Molecular and morphological analyses were used to evaluate the genetic diversity and phylogenetic relationships of native and introduced populations. METHODS: Nuclear (internal transcribed spacer-ITS; phytoene desaturase-PDS) and plastid (trnL-F) sequence data were evaluated phylogenetically using likelihood and Bayesian methods. Leaf morphologies were compared among clades that were identified in phylogenetic analyses. RESULTS: Data from both ITS and PDS show multiple instances of polymorphic sequences that could be traced to two or more lineages, including both invasive biotypes in the Americas. Leaf morphological data support the distinctness of lineages and provide a metric for distinguishing monoecious and dioecious biotypes in the United States. CONCLUSIONS: Nuclear molecular data indicate far greater genetic diversity than could be estimated using plastid markers. Substantially divergent copies of nuclear genes, found in multiple populations worldwide, likely result from interlineage hybridization. Invasive monoecious and dioecious hydrilla biotypes in the Americas are genetically distinct, with both biotypes resulting from admixture among Eurasian progenitors. Genetic similarity to populations in India and South Korea, respectively, implicates these as likely origins for the dioecious and monoecious biotypes.
72
R: A Language and Environment for Statistical Computing
R Core Team · 2000 · 353K citations · Full text
Natural Sciences, Computer Science, Statistical Computing +10
Universal primers for amplification of three non-coding regions of chloroplast DNA
Pierre Taberlet, Ludovic Gielly, Guy Pautou et al. · Plant Molecular Biology · 1991 · 5.7K citations