BioSwitch: a tool for the detection of bistability and multi-steady state behaviour in signalling and gene regulatory networks

New features of the software M<scp>at</scp>C<scp>ont</scp>for bifurcation analysis of dynamical systems

Annick Dhooge, W. Govaerts, Yuri A. Kuznetsov et al. · Mathematical and Computer Modelling of Dynamical Systems · 2008 · 564 citations · Full text

Limit Cycles, Engineering, Discrete Dynamical System +12

MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics

José A. Egea, David Henriques, Thomas Cokelaer et al. · BMC Bioinformatics · 2014 · 182 citations · Full text

Subnetwork analysis reveals dynamic features of complex (bio)chemical networks

Carsten Conradi, Dietrich Flockerzi, Jörg Raisch et al. · Proceedings of the National Academy of Sciences · 2007 · 124 citations · Full text

Chemical Networks, Engineering, Interaction Network +16

Bifurcation discovery tool

Vijay Chickarmane, Sri Paladugu, Frank Bergmann et al. · Bioinformatics · 2005 · 65 citations · Full text

CoNtRol: an open source framework for the analysis of chemical reaction networks

Pete Donnell, Murad Banaji, Anca Marginean et al. · Bioinformatics · 2014 · 44 citations