Australian Systematic Botany · 2019 · 14 citations · 63 references
EngineeringBotanyData CurationSemantic WebData EcosystemOntology-based Data IntegrationPhylogeneticsData ScienceInformation RetrievalLegume-systematics CommunityData IntegrationLegume ScienceLinked DataData ManagementOpen DataBiodiversityLegume-focused PortalPlant TaxonomyLegume-focused PortalsNatural SciencesEvolutionary BiologySymbiosisBig Data
The need for scientists to exchange, share and organise data has resulted in a proliferation of biodiversity research-data portals over recent decades. These cyber-infrastructures have had a major impact on taxonomy and helped the discipline by allowing faster access to bibliographic information, biological and nomenclatural data, and specimen information. Several specialised portals aggregate particular data types for a large number of species, including legumes. Here, we argue that, despite access to such data-aggregation portals, a taxon-focused portal, curated by a community of researchers specialising on a particular taxonomic group and who have the interest, commitment, existing collaborative links, and knowledge necessary to ensure data quality, would be a useful resource in itself and make important contributions to more general data providers. Such an online species-information system focused on Leguminosae (Fabaceae) would serve useful functions in parallel to and different from international data-aggregation portals. We explore best practices for developing a legume-focused portal that would support data sharing, provide a better understanding of what data are available, missing, or erroneous, and, ultimately, facilitate cross-analyses and direct development of novel research. We present a history of legume-focused portals, survey existing data portals to evaluate what is available and which features are of most interest, and discuss how a legume-focused portal might be developed to respond to the needs of the legume-systematics research community and beyond. We propose taking full advantage of existing data sources, informatics tools and protocols to develop a scalable and interactive portal that will be used, contributed to, and fully supported by the legume-systematics community in the easiest manner possible.
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TRY – a global database of plant traits
Jens Kattge, Sandra Lavorel, I. Colin Prentice et al. · Global Change Biology · 2011 · 2.6K citations · Full text
MassBank: a public repository for sharing mass spectral data for life sciences
Hisayuki Horai, Masanori Arita, Shigehiko Kanaya et al. · Journal of Mass Spectrometry · 2010 · 2.4K citations · Full text