Journal of the American Chemical Society · 2019 · 40 citations · 43 references
Life SciencesBiochemistryBiophysicsLipid BiochemistryMembrane BiochemistryMembrane BiophysicsLipid StructureMembrane AsymmetryMembrane DomainsMembrane DynamicsMembrane MechanicsMembrane OrganizationAll-atom ModelingAll-atom Molecular DynamicsAll-atom SimulationsDomain CouplingDouble Bond ConfigurationMembrane Domain RegistrationMembrane Protein DomainsMolecular Dynamics Of Lipid Membranes
Inter-leaflet coupling is critical to control the dynamics of membrane domain registration/anti-registration, which is important in maintaining proper biological functions. Factors such as lipid acyl chain inter-digitation and membrane remodeling have been found to be able to regulate the inter-leaflet coupling. However, detailed molecular mechanisms that dominate the inter-leaflet coupling are still far from clear. Here, we revealed that lipid acyl chain cis double bond position can regulate the inter-leaflet coupling according to our coarse-grained and all-atom molecular dynamics simulations. The farther the double bond is away from the lipid tail terminal, the weaker the inter-leaflet attractive interactions between unsaturated lipids. Therefore, the relative motions of membrane domains in two membrane leaflets become more obvious (membrane domain anti-registration). Generally, our simulations validated a direct indicator for the inter-leaflet coupling strength, which provides physical insights into the molecular mechanisms of membrane domain registration/anti-registration.
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A smooth particle mesh Ewald method
Ulrich Essmann, L. Perera, Max L. Berkowitz et al. · The Journal of Chemical Physics · 1995 · 22.9K citations
Canonical sampling through velocity rescaling
Giovanni Bussi, Davide Donadio, Michele Parrinello · The Journal of Chemical Physics · 2007 · 18.4K citations · Full text
Natural Sciences, Chemistry, Physics +17