Molecular Cell · 2019 · 377 citations · 69 references
Life SciencesGeneticsMolecular BiologyGene ExpressionRna ProcessingTranscriptionAlternative SplicingRna SplicingRna-protein InteractionsCo-transcriptional Mrna ProcessingCo-transcriptional SplicingPre-messenger Ribonucleic Acid (Pre-mrna) SplicingPre-messenger Rna SplicingSplicing Factors
69
The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
Fast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text
Gene Ontology: tool for the unification of biology
Michael Ashburner, Catherine A. Ball, Judith A. Blake et al. · Nature Genetics · 2000 · 44.6K citations · Full text