Journal of Surgical Oncology · 2019 · 14 citations · 28 references
MedicineOncologyPathologyNeoplasiaTranscriptomicsTumor MicroenvironmentCancer TranscriptomicsGene Set Enrichment AnalysisThyroid CancerTranscriptomic AnalysisTranscriptomic ProfilingTumor ClassificationCancer Genomics DatabasesCluster AnalysisComparative Cancer Gene Expression ProfilesHierarchical Cluster AnalysisMatched Cohort AnalysisTissue Expression ProfilesTumor Microenvironment EffectsTumor Profiling
BACKGROUND: Papillary thyroid microcarcinoma exhibits an indolent clinical course and could be a candidate for active surveillance in the appropriate setting. It remains unknown whether papillary microcarcinoma is biologically different from larger papillary carcinoma >1 cm. METHODS: We analyzed clinicopathological information and transcriptome data of papillary thyroid cancer samples from The Cancer Genome Atlas. Propensity-score matching was used to construct a matched cohort consisting of 29 microcarcinomas and 58 carcinomas. Principal component analysis and unsupervised hierarchical cluster analysis were carried out to investigate the similarity of gene expression profiles. RESULTS: After adjustment for differences in baseline clinicopathological and genetic factors, transcriptome could be grouped mainly on the basis of tumor class (BRAF-like vs RAS-like) and tumor size (microcarcinoma vs carcinoma). The gene set enrichment analysis showed that extracellular matrix-associated pathways were enriched in the MSigDB database. CONCLUSION: Papillary thyroid microcarcinomas display a distinct gene expression pattern different from the corresponding carcinomas. We hypothesize that tumor microenvironment may play a role in the microcarcinoma/carcinoma phenotypic divergence.
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Integrated Genomic Characterization of Papillary Thyroid Carcinoma
Nishant Agrawal, Rehan Akbani, Bülent Arman Aksoy et al. · Cell · 2014 · 3.1K citations · Full text
Papillary thyroid microcarcinoma: A study of 900 cases observed in a 60-year period
Ian D. Hay, Maeve E. Hutchinson, Tomas Gonzalez‐Losada et al. · Surgery · 2008 · 942 citations