Emerging Microbes & Infections · 2019 · 35 citations · 48 references
Life SciencesMicrobiologyMolecular BiologyDna ReplicationGenomicsVirologyOncogenic VirusesPathogen GenomicsPlasmid BiologyPlasmid GeneticsPlasmid ReplicationViral GenomicsPlasmid - Host InteractionsPlasmid ClassificationPlasmid Replication Origins
analyses of 109 replication-competent genomic DNA sequences isolated from cow milk and its products (97 in the bovine meat and milk factors 2 group - BMMF2, and additional 4 in BMMF1) seems to place these in a specific class of infectious agents spanning between bacterial plasmid and circular ssDNA viruses. Satellite-type small plasmids with partial homology to larger genomes, were also isolated in both groups. A member of the BMMF1 group H1MBS.1 was recovered in a distinctly modified form from colon tissue by laser microdissection. Although the evolutionary origin is unknown, it draws the attention to the existence of a hitherto unrecognized, broad spectrum of potential pathogens. Indirect hints to the origin and structure of our isolates, as well as to their replicative behaviour, result from parallels drawn to the Hepatitis deltavirus genome structure and replication.
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CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP
Joseph Felsenstein · Evolution · 1985 · 41.5K citations · Full text
MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
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The Phyre2 web portal for protein modeling, prediction and analysis
Lawrence A. Kelley, Stefans Mezulis, Christopher M. Yates et al. · Nature Protocols · 2015 · 10.2K citations · Full text