mBio · 2019 · 66 citations · 34 references
Life SciencesBiochemistryMolecular BiologyGenomicsMetabolismNatural Product BiosynthesisBiosynthetic Gene ClustersMetabolic Pathway AnalysisMetabolite ProfilingMicrobial Metabolite ProductionMicrobial Natural Product BiosynthesisBiosynthetic Gene Cluster AnalysisBiosynthetic Pathway AnalysisBiosynthetic Pathway MiningCryptic Gene Cluster DiscoveryGenome MiningGenome Mining For Natural ProductsNatural Product Biosynthesis Gene DiscoveryNatural Product Gene Cluster Identification
Access to whole-genome sequences has exposed the general incidence of the so-called cryptic biosynthetic gene clusters (BGCs), thereby renewing their interest for natural product discovery. As a consequence, genome mining is the often first approach implemented to assess the potential of a microorganism for producing novel bioactive metabolites. By revealing a new level of complexity of natural product biosynthesis, we further illustrate the difficulty of estimation of the panel of molecules associated with a BGC based on genomic information alone. Indeed, we found that the same gene cluster is responsible for the production of compounds which differ in terms of structure and bioactivity. The production of these different compounds responds to different environmental triggers, which suggests that multiplication of culture conditions is essential for revealing the entire panel of molecules made by a single BGC.
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Bertolt Gust, Gregory L. Challis, Kay Fowler et al. · Proceedings of the National Academy of Sciences · 2003 · 1.4K citations
antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification
Kai Blin, Thomas Wolf, Marc G. Chevrette et al. · Nucleic Acids Research · 2017 · 1.2K citations · Full text
Minimum Information about a Biosynthetic Gene cluster
Marnix H. Medema, Renzo Kottmann, Pelin Yilmaz et al. · Nature Chemical Biology · 2015 · 908 citations · Full text